Table 3 Compression of identifiers and sequences: Blue color represents original file size
Dataset | Method | Read identifiers (MB) | Sequences (MB) | Identifiers & Sequences (MB) | C-ratio |
|---|---|---|---|---|---|
SRR554369 | Original | blue60.8 | blue167.4 | blue228.2 | |
gzip | 7.5 | 48.8 | 56.3 | 4.05 | |
bzip2 | 3.8 | 46.7 | 50.5 | 4.52 | |
LZMA | 0.8 | 17.6 | 18.4 | 12.40 | |
Leon | 0.1 | 18.6 | 18.7 | 12.20 | |
SCALCE | 6.8 | 17.0 | 23.8 | 9.59 | |
Slimfastq | 0.1 | 29.9 | 30.0 | 7.61 | |
LFQC | 0.0 | 17.4 | 17.4 | green13.15 | |
Deliminate | N/A | N/A | 27.9 | 8.18 | |
MFCompress | N/A | N/A | 14.0 | 16.30 | |
SRR327342 | Original | blue978.1 | blue962.3 | blue1940.4 | |
gzip | 83.6 | 284.0 | 367.6 | 5.28 | |
bzip2 | 70.9 | 269.4 | 340.3 | 5.70 | |
LZMA | 46.7 | 120.2 | 166.9 | 11.63 | |
Leon | 26.3 | 89.3 | 115.6 | 16.79 | |
SCALCE | 69.7 | 68.4 | 138.1 | 14.05 | |
Slimfastq | 23.0 | 149.0 | 172.0 | 11.28 | |
LFQC | 20.9 | 128.7 | 149.6 | 12.97 | |
Deliminate | N/A | N/A | 164.1 | 11.83 | |
MFCompress | N/A | N/A | 124.9 | green15.54 | |
MH0001 | Original | blue416.4 | blue523.8 | blue940.2 | |
gzip | 36.7 | 157.5 | 194.2 | 4.84 | |
bzip2 | 32.1 | 151.4 | 183.5 | 5.12 | |
LZMA | 22.0 | 101.7 | 123.7 | 7.60 | |
Leon | 20.6 | 87.0 | 107.6 | 8.74 | |
SCALCE | 76.7 | 70.7 | 147.4 | 6.38 | |
Slimfastq | 17.5 | 103.7 | 121.2 | 7.76 | |
LFQC | 16.1 | 103.2 | 119.3 | 7.88 | |
Deliminate | N/A | N/A | 115.9 | 8.11 | |
MFCompress | N/A | N/A | 111.1 | green8.46 | |
SRR1284073 | Original | blue4.9 | blue649.6 | blue654.5 | |
gzip | 0.8 | 182.7 | 183.5 | 3.57 | |
bzip2 | 0.7 | 176.5 | 177.2 | 3.69 | |
LZMA | 0.5 | 160.1 | 160.6 | 4.08 | |
Leon | 0.3 | 170.1 | 170.4 | 3.84 | |
SCALCE | N/A | N/A | N/A | N/A | |
Slimfastq | N/A | N/A | N/A | N/A | |
LFQC | 0.3 | 155.8 | 156.1 | 4.19 | |
Deliminate | N/A | N/A | 155.2 | 4.22 | |
MFCompress | N/A | N/A | 155.9 | green4.20 | |
SRR870667 | Original | blue3,947.2 | blue7.546.1 | blue11,493.3 | |
gzip | 514.3 | 2081.6 | 2595.9 | 4.43 | |
bzip2 | 422.0 | 1,974.4 | 2396.4 | 4.80 | |
LZMA | 280.4 | 1515.7 | 1796.1 | 6.40 | |
Leon | 139.7 | 1363.1 | 1502.8 | 7.65 | |
SCALCE | 341.6 | 999.4 | 1341.0 | 8.57 | |
Slimfastq | 128.2 | 1419.1 | 1547.3 | 7.43 | |
LFQC | 122.2 | N/A | N/A | N/A | |
Deliminate | N/A | N/A | 1768.5 | 6.50 | |
MFCompress | N/A | N/A | 1407.7 | green8.16 | |
ERR174310 | Original | blue11,107.5 | blue21,173.1 | blue32,280.6 | |
gzip | 1483.8 | 6018.7 | 7501.7 | 4.30 | |
bzip2 | 1223.6 | 5745.2 | 6968.8 | 4.63 | |
LZMA | 691.0 | 4982.0 | 5673.0 | 5.69 | |
Leon | 355.2 | 4734.4 | 5089.6 | 6.34 | |
SCALCE | 1073.0 | 3016.0 | 4089.0 | 7.89 | |
Slimfastq | 323.4 | 4426.4 | 4749.8 | 6.80 | |
LFQC | N/A | N/A | N/A.0 | N/A | |
Deliminate | N/A | N/A | 5604.0 | 5.76 | |
MFCompress | N/A | N/A | 4666.3 | green6.92 |