Source Code for Biology and Medicine

Articles

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Software

goSTAG: gene ontology subtrees to tag and annotate genes within a set

Brian D. Bennett and Pierre R. Bushel

Published on: 13 April 2017
Software

LitDB - Keeping Track of Research Papers From Your Institute Made Simple

Jörn Bethune, Lars Kraemer, Ingo Thomsen, Andreas Keller, David Ellinghaus and Andre Franke

Published on: 21 March 2017
Software

NET: a new framework for the vectorization and examination of network data

Jana Lasser and Eleni Katifori

Published on: 8 February 2017
Methodology

Algorithm and software to automatically identify latency and amplitude features of local field potentials recorded in electrophysiological investigation

Maria Rubega, Claudia Cecchetto, Stefano Vassanelli and Giovanni Sparacino

Published on: 7 February 2017
Software

DEApp: an interactive web interface for differential expression analysis of next generation sequence data

Yan Li and Jorge Andrade

Published on: 3 February 2017

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Research

Purposeful selection of variables in logistic regression

Zoran Bursac, C Heath Gauss, David Keith Williams and David W Hosmer

Published on: 16 December 2008
Commentary

How Not to Be a Bioinformatician

Manuel Corpas, Segun Fatumo and Reinhard Schneider

Published on: 28 May 2012
Research

Wndchrm – an open source utility for biological image analysis

Lior Shamir, Nikita Orlov, D Mark Eckley, Tomasz Macura, Josiah Johnston and Ilya G Goldberg

Published on: 8 July 2008
Methodology

CellSegm - a MATLAB toolbox for high-throughput 3D cell segmentation

Erlend Hodneland, Tanja Kögel, Dominik Michael Frei, Hans-Hermann Gerdes and Arvid Lundervold

Published on: 9 August 2013
Software review

Automatic Fortran to C++ conversion with FABLE

Ralf W Grosse-Kunstleve, Thomas C Terwilliger, Nicholas K Sauter and Paul D Adams

Published on: 28 May 2012

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Editors-in-Chief

Emmanuel Ifeachor, University of Plymouth, UK
Leif E Peterson, The Methodist Hospital Research Institute (TMHRI), USA

Aims and scope

Source Code for Biology and Medicine considers manuscripts on all aspects of workflow for information systems, decision support systems, client user networks, database management, and data mining. The journal aims to publish source code for distribution and use in the public domain in order to advance biological and medical research. Through this dissemination, it may be possible to shorten the time required for solving certain computational problems for which there is limited source code availability or resources.

Fundamentally, the overarching computation-related goals of the journal are to:

Increase productivity among source code users working on problems of public and environmental health importance
Reduce discovery times in molecular and genomic sciences
Reduce search times for source code applied in biological and medical research
Provide a historical reflection of source code applied in various fields
Serve as a repository for source code

New section now accepting submissions: R/Bioconductor

Source Code for Biology and Medicine is accepting submissions for its new R/Bioconductor section, edited by Section Editor Dr. Levi Waldron at City University of New York, along with our Editors-in-Chief. This section will showcase well-documented and usable software packages, workflows, and data resources.

Click here for more information

Articles

Editors-in-Chief

Aims and scope

New section now accepting submissions: R/Bioconductor

Source Code for Biology and Medicine

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