From: TagDigger: user-friendly extraction of read counts from GBS and RAD-seq data
Software | Size of intermediate files generated (Gb) | RAM utilized by pipeline (Gb) | Total time, across all processor cores, to process 203,000,000 FASTQ reads and output genotypes (min) |
---|---|---|---|
UNEAK pipeline in TASSEL 3.0 | 0.5 | 1.9 | 22 |
Stacks 1.4 | 8.2 | 4.2 | 424 |
pyRAD 3.0 | 40.9 | 18.5 | 23,215 |