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Table 9 Slow down of BAM duplicate marking due to concurrency on the Xeon E5-2620 machine

From: biobambam: tools for read pair collation based algorithms on BAM files

Data set

biobambam

Picard

bamUtil

HG03520

1.61

1.71

1.62

HG00096

1.60

1.70

1.59

  1. Ratio of run-time between 24 and 1 concurrently running instances of biobambam’s bammarkduplicates2, Picard’s MarkDuplicates and bamUtil’s dedup on the Xeon E5-2620 machine for the data sets HG03520 and HG00096.
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