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Table 7 Slow down of BAM to FastQ conversion due to concurrency on the Xeon E5-2620 machine

From: biobambam: tools for read pair collation based algorithms on BAM files

Data set

biobambam

bam2fastq

bampe2fqworphans

Picard

bamUtil

HG03520

1.65

1.68

1.70

2.80

1.87

HG00096

1.64

1.70

1.74

2.78

1.87

  1. Ratio of run-time between24 and 1 concurrently running instances of biobambam’s bamtofastq, bam2fastq, bampe2fqworphans, Picard’s SamToFastq and bamUtil’s bam2fastq on the Xeon E5-2620 machine for the data sets HG03520 and HG00096.
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