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Table 2 Characteristics of test files used for compute farm test

From: biobambam: tools for read pair collation based algorithms on BAM files

Test file characteristics of files used for compute farm

Name

File size/GB

Depth

Mate distance

Number of reads

HG03520

1

8

25

10613096

ERR239642

2

1

3

20024712

ERR217514

5

2

4

49993736

ERR196957

7

1

148

99923268

HG00096

15

4

5

145063589

ERR328876

33

12

46

359486910

ERR054938

32

10

30

427080966

ERR328190

36

14

63

427700148

SRP017681

44

890

158240

723287936

ERP001231

95

45

107

1357751670

  1. Characteristics of test files used for compute farm test. The depth column states the median depth over all reference bases with any coverage. The mate distance column gives the median of the distance of mates in the input file. File sizes are rounded to integer GB.
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