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Table 1 Characteristics of test files used for PC test

From: biobambam: tools for read pair collation based algorithms on BAM files

Test file characteristics

Name

HG03520

HG00096

ERP001231

SRP017681

File size/GB

1

15

95

44

Depth median

8

4

45

879

Mate distance median

25

5

107

158240

Number of reads

10613096

145063589

1357751670

723287936

  1. Characteristics of test the files used for the PC test. The depth row states the median depth over all reference bases with any coverage. The mate distance row gives the median of the distance of mates in the input file. File sizes are rounded to integer GB.
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