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Table 5 Compression ratios of evaluated tools

From: MZPAQ: a FASTQ data compression tool

Dataset

SRR554369

SRR327342

MH0001

SRR1284073

SRR870667

ERR174310

Gzip

3.16

3.87

3.89

2.40

3.43

2.96

Bzip2

3.74

4.67

4.82

2.83

4.06

3.62

LZMA

4.99

5.47

5.15

2.84

4.40

3.67

Leon

5.48

7.13

6.45

2.73

5.08

3.95

SCALCE

5.97

7.96

6.32

N/A

6.20

4.98

Slimfastq

5.87

7.66

7.07

N/A

6.00

4.88

LFQC

7.02

8.06

7.18

3.22

N/A

N/A

MZPAQ

7.04

8.49

7.98

3.22

6.27

5.00

  1. N/A refers to unsuccessful compression
  2. The values in bold typeface represent the best performance