Table 4 Compression of Quality Scores: Blue color represents original file size
Dataset | Method | Compression size (MB) | Compression ratio |
|---|---|---|---|
SRR554369 | Original | blue167.4 | |
gzip | 64.7 | 2.59 | |
bzip2 | 57.6 | 2.91 | |
LZMA | 57.0 | 2.94 | |
Leon | 64.6 | 2.59 | |
SCALCE | 52.0 | 3.22 | |
Slimfastq | green47.8 | green3.50 | |
LFQC | 47.6 | 3.52 | |
SRR327342 | Original | blue962.3 | |
gzip | 428.6 | 2.25 | |
bzip2 | 405.8 | 2.37 | |
LZMA | 383.5 | 2.51 | |
Leon | 429.1 | 2.24 | |
SCALCE | 349.3 | 2.75 | |
Slimfastq | green334.9 | green2.87 | |
LFQC | 332.0 | 2.89 | |
MH0001 | Original | blue523.8 | |
gzip | 184.4 | 2.84 | |
bzip2 | 173.5 | 3.02 | |
LZMA | 165.9 | 3.16 | |
Leon | 183.9 | 2.85 | |
SCALCE | 297.5 | 1.76 | |
Slimfastq | green144.8 | green3.62 | |
LFQC | 142.3 | 3.68 | |
SRR1284073 | Original | blue649.6 | |
gzip | 308.7 | 2.10 | |
bzip2 | 283.6 | 2.29 | |
LZMA | green280.5 | green2.32 | |
Leon | 308.6 | 2.10 | |
SCALCE | N/A | N/A | |
Slimfastq | N/A | N/A | |
LFQC | 250.7 | 2.59 | |
SRR870667 | Original | blue7,546.1 | |
gzip | 3021.5 | 2.50 | |
bzip2 | 2780.7 | 2.71 | |
LZMA | 2668.8 | 2.83 | |
Leon | 3022.4 | 2.50 | |
SCALCE | 2365.0 | 3.19 | |
Slimfastq | green2281.7 | green3.31 | |
LFQC | 2259.9 | 3.34 | |
ERR174310 | Original | blue21,173.1 | |
gzip | 8525.8 | 2.48 | |
bzip2 | 7439.9 | 2.85 | |
LZMA | 7397.0 | 2.86 | |
Leon | 8533.3 | 2.48 | |
SCALCE | 6738.0 | 3.14 | |
Slimfastq | green6295.0 | green3.36 | |
LFQC | 6103.0 | 3.47 |