Table 2 Description of benchmark datasets
Identifier | Size (MB) | Type | Technique | Organism | Description |
|---|---|---|---|---|---|
SRR 554369 | 456 | FASTQ paired short reads | Illumina GAIIx; 50x total depth | P.aeruginosa | Small genome (6-7 MB), medium depth |
SRR 327342 | 3,881 | FASTQ paired short reads | Illumina GAII; 175x total depth; | S.cerevisiae | Small genome (12 MB), high depth. |
MH0001. 081026 | 1,880 | FASTQ paired short reads | Illumina GA; unknown depth | Human gut metagenome | Mixed species and unknown references |
SRR 1284073 | 1,309 | FASTQ single variable-length long reads | PacBio; 140x depth | Bacteria E.Coli | Small genome (4.7 MB), higher error rate. |
SRR 870667 | 22,987 | FASTQ paired short reads | Illumina GAIIx; 35x total depth | Plant T.cacao. | Medium sized genome (345 MB) |
ERR 174310 | 53,869 | FASTQ paired short reads | Illumina HiSeq 2000; 13x total depth | H.sapiens (NA12877) individual | Common instrument depth |