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Table 3 The evaluation results of quality assessment of protein models using different SOV scores as machine learning features

From: SOV_refine: A further refined definition of segment overlap score and its significance for protein structure similarity

  Stage 1 Stage 2 MCC
wmPMCC Ave loss Ave ΔGDT wmPMCC Ave loss Ave ΔGDT
Basic 0.70 0.102 0.00381 0.39 0.068 0.00083 0.736
Basic + SOV’99 0.71 0.093 0.00368 0.42 0.074 0.00083 0.733
Basic + SOV_refine (λ = 0.1) 0.71 0.096 0.00368 0.41 0.073 0.00083 0.740
Basic + SOV_refine (λ = 1) 0.71 0.084 0.00361 0.40 0.066 0.00084 0.750