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Table 2 A reference sequence with four states (i.e., A, B, C, and D) compared with four predicted sequences using Q4 (Accuracy), SOV’99, and SOV_refine with different λ values

From: SOV_refine: A further refined definition of segment overlap score and its significance for protein structure similarity

Index Sequence Q4 SOV’99 SOV_refine
λ = 1 λ = 0.5 λ = 0.1
Reference AABBBBBBCCCCCCDD
Predicted 1 AAAAABBBCCCDDDDD 0.625 0.65 0.807 0.641 0.508
Predicted 2 AAAABBBBCCCCDDDD 0.75 0.938 0.925 0.85 0.67
Predicted 3 AAABBBBBCCCCCDDD 0.875 1.0 1.0 0.961 0.851
Predicted 4 AABBBBBBCCCCCDDD 0.938 1.0 1.0 0.981 0.925