Table 2 A reference sequence with four states (i.e., A, B, C, and D) compared with four predicted sequences using Q4 (Accuracy), SOV’99, and SOV_refine with different λ values
Index | Sequence | Q4 | SOV’99 | SOV_refine | ||
|---|---|---|---|---|---|---|
λ = 1 | λ = 0.5 | λ = 0.1 | ||||
Reference | AABBBBBBCCCCCCDD | – | – | – | – | – |
Predicted 1 | AAAAABBBCCCDDDDD | 0.625 | 0.65 | 0.807 | 0.641 | 0.508 |
Predicted 2 | AAAABBBBCCCCDDDD | 0.75 | 0.938 | 0.925 | 0.85 | 0.67 |
Predicted 3 | AAABBBBBCCCCCDDD | 0.875 | 1.0 | 1.0 | 0.961 | 0.851 |
Predicted 4 | AABBBBBBCCCCCDDD | 0.938 | 1.0 | 1.0 | 0.981 | 0.925 |