From: TagDigger: user-friendly extraction of read counts from GBS and RAD-seq data
Number of tags | Time to build indexing tree (s) | Time to process 10,000 FASTQ reads (s) | Estimated time to process 200,000,000 FASTQ reads (min) |
---|---|---|---|
100 | 0.03 ± 0.01 | 0.218 ± 0.016 | 73 |
1000 | 0.84 ± 0.09 | 0.238 ± 0.005 | 79 |
10,000 | 7.79 ± 1.18 | 0.291 ± 0.007 | 97 |