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Table 1 Performance of the TagDigger search algorithm on a FASTQ file from RAD-seq with 96 barcodes

From: TagDigger: user-friendly extraction of read counts from GBS and RAD-seq data

Number of tags Time to build indexing tree (s) Time to process 10,000 FASTQ reads (s) Estimated time to process 200,000,000 FASTQ reads (min)
100 0.03 ± 0.01 0.218 ± 0.016 73
1000 0.84 ± 0.09 0.238 ± 0.005 79
10,000 7.79 ± 1.18 0.291 ± 0.007 97
  1. For each number of tags, 1000 replications were performed with TagDigger, each with a different randomly-sampled subset of tags, and each with a different set of 10,000 reads from the FASTQ file. Means and standard deviations are provided