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Table 1 Networks identified in a Wormpath analysis of 1349 genes regulated upon UV radiation

From: Wormpath: searching for molecular interaction networks in Caenorhabditis elegans

 

Genes involved

Nodes

Edges

Score

p-value (score)

p-value (list)

1

daf-3, peb-1, myo-2, daf-36, daf-16, daf-2

6

6

23.33

0.0006

<0.0001

2

cav-1, sur-5, sma-6, lin-28, let-653, kin-15, unc-52, let-60, unc-6, ces-1, col-48, glp-1, daf-2, daf-12, F40F4.6, sqt-1, daf-16, kin-9

18

19

8.58

0.001

<0.0001

3

sbds-1, daf-3, ins-7, F26A1.9, acs-20, nhr-49, lys-7, daf-16, C26B9.3, mtl-1, agmo-1, acs-2, npp-9, myo-2, C29F9.2, daf-2, gei-7, C14A4.9, cyp-42A1, let-653, daf-36, nstp-3, T22B11.2

23

26

6.58

0.0018

<0.0001

4

cyp-42A1, daf-16, ugt-62, nhr-49, gei-7, daf-36, npp-9, lys-7, C14A4.9, C26B9.3, daf-2, F40F4.6, sbds-1, egl-15, let-756, acs-2, acs-20, ins-7, nstp-3, mtl-1, C29F9.2, agmo-1, T22B11.2, T24C12.4, daf-3, F26A1.9, ZK418.7, let-653

28

31

5.68

0.0018

<0.0001

5

cav-1, lon-3, sqt-1, unc-52, unc-6, glp-1, kin-15, F40F4.6, sqt-3, let-60, rol-6

11

12

5.58

0.009

<0.0001

6

F26A1.9, acs-2, daf-2, C29F9.2, lys-7, daf-36, agmo-1, nhr-49, sur-5, daf-3, let-653, vab-1, C14A4.9, unc-6, daf-16, ces-1, daf-12, cyp-42A1, mtl-1, C26B9.3, nstp-3, cav-1, let-60, T22B11.2, npp-9, nhr-8, kin-9, sbds-1, ins-7, acs-20, gei-7, qua-1

32

36

5.17

0.0042

<0.0001

7

unc-2, nhr-49, C14A4.9, let-653, daf-16, C29F9.2, unc-25, mrp-1, agmo-1, let-60, sbds-1, daf-2, fasn-1, daf-11, nsy-4, cyp-42A1, cav-1, lin-28, daf-12, daf-7, ins-7, mtl-1, C26B9.3, myo-2, F26A1.9, daf-3, acs-20, sir-2.1, lys-7, T22B11.2, abu-11, nstp-3, acs-2, daf-36, daf-1, gei-7, npp-9

37

42

4.81

0.003

<0.0001

8

lin-14, daf-16, daf-12, cav-1, col-17, ins-33, lin-46, lin-28

8

9

2.67

0.0814

<0.0001

9

lim-6, daf-16, unc-25, zig-2, fasn-1, daf-7

6

5

1.80

0.3028

<0.0001

10

daf-1, daf-11, mrp-1, fasn-1, unc-25, daf-16, daf-7

7

7

1.71

0.3576

<0.0001

11

sur-5, let-60, ces-1, F56D2.3, kin-9, crb-1, cav-1, let-653, phg-1, atl-1, clk-2, unc-6

12

11

1.64

0.361

<0.0001

12

ces-1, unc-6, let-60, ced-11, ced-3, kin-9, sur-5, let-653, cav-1

9

8

1.62

0.418

<0.0001

13

glp-1, cav-1, kin-15, F40F4.6, sqt-1

5

4

1.50

0.4766

<0.0001

14

peb-1, lin-31, sur-5, lin-45, kin-9, let-60, ces-1, unc-6, let-653, cav-1

10

9

1.44

0.5824

<0.0001

15

sur-5, egl-30, sqt-1, cav-1, unc-6, glp-1, ces-1, unc-52, gtl-1, mig-17, kin-9, let-653, egl-8, let-60, lev-11

15

15

1.40

0.6734

<0.0001

16

F40F4.6, ugt-62, glp-1, T24C12.4, let-756, npp-9, sqt-1, kin-15, cav-1

9

8

1.25

0.76

<0.0001

17

let-23, che-14, lin-45, sur-5, lin-26, dsl-5, peb-1, ZK418.7, lin-31

9

8

1.00

>0.9999

0.0018

18

let-23, lin-31, dsl-5, ZK418.7, col-48, bar-1

6

5

1.00

>0.9999

<0.0001

19

egl-15, dsl-5, ZK418.7, npp-9, lin-31, let-23

6

5

1.00

>0.9999

<0.0001

20

acn-1, mlt-9, nhr-23, qua-1, nhr-25

5

4

1.00

>0.9999

0.0005

21

ptr-16, ptr-1, ptr-6, ptr-10

4

4

1.00

>0.9999

<0.0001

22

sma-6, cav-1, bar-1, dsl-5, col-48

5

4

1.00

>0.9999

<0.0001

23

dpy-13, bli-4, dpy-5, dpy-6

4

3

1.00

>0.9999

<0.0001

24

nsy-4, daf-16, unc-2

3

2

1.00

>0.9999

0.0037

25

sym-5, sym-1

2

1

1.00

>0.9999

0.0046