Table 1 Mega2 currently supports 37 output targets seven new ones have been added since 2011
From: Mega2: validated data-reformatting for linkage and association analyses
| SimWalk2 format [28] | SOLAR format [4],[5] | Mendel format [7] |
| Vintage MENDEL format [8] | Vitesse format [29] | SUP format [30],[31] |
| ASPEX format | Linkage format [11]-[13] Pre-makeped format [11]-[13] | Cranefoot format [16] |
| GeneHunter-Plus format [32] | Testing loci for HWE | Mega2 annotated format |
| GeneHunter format [33],[34] | Allegro format [35] | IQLS/Idcoefs format [17],[36] (added 6/11) |
| Conversion to nuclear families | MLBQTL format [37] | PLINK format [14] (binary added 1/13) |
| SLINK format [30],[31],[38] | SAGE format [39] | FBAT format [20] (added 1/13) |
| SPLINK format [40] | Merlin/SimWalk2-NPL format | Morgan format [21] (added 6/13) |
| Homogeneity analyses | PREST format [2],[3] | Beagle format [22],[41]-[43] (added 6/13) |
| SIMULATE format [44] | PAP format [45],[46] | Eigenstrat format [23],[24] (added 6/13) |
| Genotype/phenotype/segregation summaries | Merlin format [47] | Structure format [25],[26],[48] (added 6/13) |
| Old SAGE format | Loki format [49] | PLINK/SEQ format [27] (added 10/13) |