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Table 1 Mega2 currently supports 37 output targets seven new ones have been added since 2011

From: Mega2: validated data-reformatting for linkage and association analyses

SimWalk2 format [28]

SOLAR format [4],[5]

Mendel format [7]

Vintage MENDEL format [8]

Vitesse format [29]

SUP format [30],[31]

ASPEX format

Linkage format [11]-[13] Pre-makeped format [11]-[13]

Cranefoot format [16]

GeneHunter-Plus format [32]

Testing loci for HWE

Mega2 annotated format

GeneHunter format [33],[34]

Allegro format [35]

IQLS/Idcoefs format [17],[36] (added 6/11)

Conversion to nuclear families

MLBQTL format [37]

PLINK format [14] (binary added 1/13)

SLINK format [30],[31],[38]

SAGE format [39]

FBAT format [20] (added 1/13)

SPLINK format [40]

Merlin/SimWalk2-NPL format

Morgan format [21] (added 6/13)

Homogeneity analyses

PREST format [2],[3]

Beagle format [22],[41]-[43] (added 6/13)

SIMULATE format [44]

PAP format [45],[46]

Eigenstrat format [23],[24] (added 6/13)

Genotype/phenotype/segregation summaries

Merlin format [47]

Structure format [25],[26],[48] (added 6/13)

Old SAGE format

Loki format [49]

PLINK/SEQ format [27] (added 10/13)