Table 1 Command line options
From: MOSAL: software tools for multiobjective sequence alignment
Option | Explanation |
|---|---|
F1 | Path to the 1st sequence file (FASTA) |
F2 | Path to the 2nd sequence file (FASTA) |
i|g | Use indels or gaps |
dp | dpp -b=N | Do not use or use pruning technique. |
If yes, specify the size of lower bound (N) | |
-ss=F | Use substitution score instead of matches |
(F is the path to the matrix file) | |
–no-traceback | Output only the scores without the alignments |