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Table 1 Data in Yeast data repository and sources

From: A dedicated database system for handling multi-level data in systems biology

Biological entity

Physical entity

Data source

Amount

Chromosome

DNA

NCBI GenBank [2]

17

Gene

DNA region

Ensembl [30]

7126

RNA transcript

RNA

Ensembl [30]

7126

Protein

Protein

UniProt [3]

6617

Compound

Small molecule

iTO977 [31]

484

Biochemical reaction

Biochemical reaction

iTO977 [31]

717

Protein-protein interaction

Molecular interaction

BioGRID [6]

72453

Transcriptional regulation interaction

Control

YEASTRACT [32] and [33]

48548

Kinase interaction

Control

[34]

1333

Phosphorylase interaction

Control

[34]

254