From: A dedicated database system for handling multi-level data in systems biology
Biological entity | Physical entity | Data source | Amount |
---|---|---|---|
Chromosome | DNA | NCBI GenBank [2] | 17 |
Gene | DNA region | Ensembl [30] | 7126 |
RNA transcript | RNA | Ensembl [30] | 7126 |
Protein | Protein | UniProt [3] | 6617 |
Compound | Small molecule | iTO977 [31] | 484 |
Biochemical reaction | Biochemical reaction | iTO977 [31] | 717 |
Protein-protein interaction | Molecular interaction | BioGRID [6] | 72453 |
Transcriptional regulation interaction | Control | 48548 | |
Kinase interaction | Control | [34] | 1333 |
Phosphorylase interaction | Control | [34] | 254 |