Figure 6
From: biobambam: tools for read pair collation based algorithms on BAM files
Run-time against memory usage plots for PC system. Plots showing run-time against space comparisons of the biobambam tools bamtofastq and bammarkduplicates2 with equivalent tools on the PC system for the four data sets HG03520, HG00096, ERP0012131 and SRP017681. bamtofastq is compared to Picard’s SamToFastQ, bamUtil’s bam2fastq, bampe2fqworphans and bam2fastq. bammarkduplicates2 is compared to Picard’s MarkDuplicates and bamUtil’s dedup. bamUtil failed our admissibility tests for BAM to FastQ conversion as well as duplicate marking on ERP0012131 and SRP0176 81 and is thus not contained in the respective plots.