Skip to main content

Table 1 Comparison of SW, SWGA, SW + and SWGA+ with regards to alignment consistency

From: Modular and configurable optimal sequence alignment software: Cola

Alignment method

Matched nucleotides

Number of motifs

Sequence in motifs

Poly-adenylation sites

SW

142,965,865

50,022

660,695

2,104

SWGA

138,315,733

51,951

697,997

2,277

SW+

142,231,531

53,135

704,241

2,291

SWGA+

138,944,794

53,609

710,514

2,310

  1. Shown are the number of matching nucleotides in pairwise alignments, the number of motifs that are six nucleotides or longer and present in at least 90% of aligned genomes, the total sequence in such motifs, and the counts of the known poly-adenylation signal AATAAA.
Back to article page

Source Code for Biology and Medicine

ISSN: 1751-0473