Table 1 Comparison of inmembrane Gram-positive protocol results with SurfG+
From: Inmembrane, a bioinformatic workflow for annotation of bacterial cell-surface proteomes
| Â | S. pyogenes | L. acidophilus | L. johnsonii | L. gasseri | L. bulgaricus | |||||
|---|---|---|---|---|---|---|---|---|---|---|
Accession | EMBL:AE004092 | EMBL:CP000033 | EMBL:AE017198 | EMBL:CP000413 | EMBL:CR954253 | |||||
Program | S | i | S | i | S | i | S | i | S | i |
CYTOPLASM(non-PSE) | 1243 | 1234 | 1290 | 1280 | 1248 | 1234 | 1262 | 1240 | 1132 | 1119 |
MEMBRANE(non-PSE) | 236 | 238 | 315 | 329 | 357 | 355 | 298 | 302 | 244 | 261 |
PSE(total) | 140 | 172 | 169 | 189 | 176 | 203 | 157 | 188 | 116 | 137 |
SECRETED | 78 | 52 | 88 | 64 | 40 | 29 | 38 | 25 | 70 | 45 |
Total | 1697 | 1696 | 1862 | 1862 | 1821 | 1821 | 1755 | 1755 | 1562 | 1562 |