Table 1 BlaSTorage comparative performances
From: BlaSTorage: a fast package to parse, manage and store BLAST results
Parser (language) | DB | Alignm. retain | 12.3mb * | 180mb * | 1.8gb * |
|---|---|---|---|---|---|
boulder (perl) | yes | yes | 213 ± 1.5 | - | - |
Bio::SearchIO (perl) | no | yes | 27 ± 0.3 | 1495 ± 12 | 148506 |
MuSeqBox (C++) | no | no | 0.73 ± 0.04 | 552.1 ± 1.5 | - |
Zerg::Report | no | no | 1.47 ± 0.12 | 122.3 ± 0.8 | - |
Blastorage (python) | yes | yes | 1.4 ± 0.8 | 37.9 ± 0.13 | 490 ± 12 |
zerg (perl) | no | no | 0.36 ± 0.01 | 26.7 ± 0.16 | 341 ± 6 |
Pyzerg | no | no | 0.35 ± 0.03 | 24.43 ± 0.3 | 312 ± 13 |
Zerg C *)blastp output, STD over five replicates | no | no | 0.08 ± 0.0 | 2.01 ± 0.04 | 74 ± 7 |