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Figure 1 | Source Code for Biology and Medicine

Figure 1

From: GEMBASSY: an EMBOSS associated software package for comprehensive genome analyses

Figure 1

Example analysis workflow with GEMBASSY. The workflow first searches the NCBI Entrez Genome database for the term “Bacillus subtilis” (gentrez), retrieves the genome flatfile of the [RefSeq:NC_000964] entry (entret), and generates a sequence logo for sequences around start codons of top or worst 100 PHX (predicted highly expressed) genes (gphx, emma, extractalign, and kweblogo). This example seamlessly utilizes GEMBASSY, EMBOSS and regular UNIX commands.

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