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Table 1 Cell segmentation software tools

From: CellSegm - a MATLAB toolbox for high-throughput 3D cell segmentation

Software tool

Developer

Com

Website

CellProfiler

Broad Institute

No

http://www.cellprofiler.org

OMAL toolbox

Frederick National Lab

No

http://ncifrederick.cancer.gov

Mosaic software

Mosaic group

No

http://www.mosaic.ethz.ch/Downloads/phasecontrast

LSDCAS

University of Iowa

No

http://www.uihealthcare.org/otherservices.aspx?id=21022

CellTrack

Middle East

No

db.cse.ohio-state.edu/CellTrack

 

Technical University

  

icy

Institut Pasteur

No

icy.bioimageanalysis.org

CyteSeer

Vala Sciences

Yes

http://www.valasciences.com/software/id/cyteseer

Cellomics

Thermo Scientific

Yes

http://www.cellomics.com

Acumen

TTP LabTech

Yes

http://www.ttplabtech.com

Epigenetics Target

Evotec

Yes

http://www.evotec.com

Profiling

   

IN Cell Investigator

GE Healthcare

Yes

http://www.biacore.com

Harmony

PerkinElmer

Yes

http://www.perkinelmer.com

CellScan LS

Imstar

Yes

http://www.imstarsa.com

iCyte

CompuCyte

Yes

http://www.compucyte.com

  1. Com = commercial.