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Figure 4 | Source Code for Biology and Medicine

Figure 4

From: CellSegm - a MATLAB toolbox for high-throughput 3D cell segmentation

Figure 4

A selection of available subroutines (magenta) and parameter settings (italic) in CELLSEGM related to the struct prm . In brackets is the supported data type. For example, to set the threshold th in the nucleus method of segmsurf, with thresholding method thrs, follow the stream of methods segmsurfgetminimanucleussegmctthrs, and assign it by prm.segmsurf.getminima.nucleus.thrs.th in the parameter file. On the other hand, if segmct is called upon from the command prompt, the same parameter setting is defined by prm.thrs.th.

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