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Table 2 A description of an input line using the default input template, sig, and the meaning of the individual elements on the input line.

From: Sig2BioPAX: Java tool for converting flat files to BioPAX Level 3 format

sig template: SN SH SM ST SL TN TH TM TT TL E TI ID

SN

Source compound name

SH

Source Swiss-Prot human accession number

SM

Source Swiss-Prot mouse accession number

ST

Source Type of compound

SL

Source cellular location

TN

Target compound name

TH

Target Swiss-Prot human accession number

TM

Target Swiss-Prot mouse accession number

TT

Target Type of compound

TL

Target cellular location

E

Effect of source on target compound - Activating, inhibiting, or neutral

TI

Type of interaction

ID

Pubmed ID of reference article

  1. Each element must be separated by whitespace, and the line is terminated by the newline character.