From: Sig2BioPAX: Java tool for converting flat files to BioPAX Level 3 format
Reaction Type | Description |
---|---|
Binding | Molecules bind to form a complex |
Kinase Phosphorylation | Kinase catalyzes addition of phosphate group to target molecule |
Dephosphorylation | Catalyst initiates removal of phosphate group from target molecule |
Guanine Nucleotide Exchange | GDP removed from complex and replaced with GTP |
GTPase activating protein | GTP bound to compound becomes GDP |
Ubiquitination | Ubiquitin molecule is added to target compound |
Deubiquitination | Ubiquitin molecule is removed from target compound |
Sumoylation | Small ubiquitin-related modifier is attached to target molecule |
Cleavage with Phospholipase C | PLC cleaves PIP2 into IP3 and DAG |
Cleavage on Cysteine | Deactivating cleavage on a cysteine residue of target protein |
Inactivating Cleavage | Deactivating cleavage of target molecule |
Activating Cleavage | Cleavage of pro-protein into active form |
Protein-protein Interaction | Otherwise unspecified reaction between two proteins |
Transcription | Protein activates or inhibits transcription of gene products |
Transcription Factor Promoter Binding | Transcription factor and protein bind to create complex |