TY - JOUR AU - Liu, X. AU - Sivaganesan, S. AU - Yeung, K. Y. AU - Guo, J. AU - Bumgarner, R. E. AU - Medvedovic, M. PY - 2006 DA - 2006// TI - Context-specific infinite mixtures for clustering gene expression profiles across diverse microarray dataset JO - Bioinformatics VL - 22 UR - https://doi.org/10.1093/bioinformatics/btl184 DO - 10.1093/bioinformatics/btl184 ID - Liu2006 ER - TY - JOUR AU - Saeed, A. I. AU - Sharov, V. AU - White, J. AU - Li, J. AU - Liang, W. AU - Bhagabati, N. AU - Braisted, J. AU - Klapa, M. AU - Currier, T. AU - Thiagarajan, M. PY - 2003 DA - 2003// TI - TM4: a free, open-source system for microarray data management and analysis JO - Biotechniques VL - 34 ID - Saeed2003 ER - TY - JOUR AU - Chu, V. AU - Gottardo, R. AU - Raftery, A. AU - Bumgarner, R. AU - Yeung, K. PY - 2008 DA - 2008// TI - MeV+R: using MeV as a graphical user interface for Bioconductor applications in microarray analysis JO - Genome Biology VL - 9 UR - https://doi.org/10.1186/gb-2008-9-7-r118 DO - 10.1186/gb-2008-9-7-r118 ID - Chu2008 ER - TY - JOUR AU - Xiang, Z. AU - Qin, Z. S. AU - He, Y. PY - 2007 DA - 2007// TI - CRCView: a web server for analyzing and visualizing microarray gene expression data using model-based clustering JO - Bioinformatics VL - 23 UR - https://doi.org/10.1093/bioinformatics/btm238 DO - 10.1093/bioinformatics/btm238 ID - Xiang2007 ER - TY - JOUR AU - Achcar, F. AU - Camadro, J. M. AU - Mestivier, D. PY - 2009 DA - 2009// TI - AutoClass@IJM: a powerful tool for Bayesian classification of heterogeneous data in biology JO - Nucl Acids Res VL - 37 UR - https://doi.org/10.1093/nar/gkp430 DO - 10.1093/nar/gkp430 ID - Achcar2009 ER - TY - JOUR AU - Eisen, M. B. AU - Spellman, P. T. AU - Brown, P. O. AU - Botstein, D. PY - 1998 DA - 1998// TI - Cluster analysis and display of genome-wide expression patterns JO - Proc Natl Acad Sci USA VL - 95 UR - https://doi.org/10.1073/pnas.95.25.14863 DO - 10.1073/pnas.95.25.14863 ID - Eisen1998 ER - TY - JOUR AU - Dennis, G. AU - Sherman, B. T. AU - Hosack, D. A. AU - Yang, J. AU - Gao, W. AU - Lane, H. C. AU - Lempicki, R. A. PY - 2003 DA - 2003// TI - DAVID: Database for Annotation, Visualization, and Integrated Discovery JO - Genome Biol VL - 4 UR - https://doi.org/10.1186/gb-2003-4-5-p3 DO - 10.1186/gb-2003-4-5-p3 ID - Dennis2003 ER - TY - CHAP AU - Medvedovic, M. PY - 2000 DA - 2000// TI - Identifying statistically significant patterns of expression via Bayesian Infinite Mixture Models BT - Critical Assessment of Microarray Data Analysis (CAMDA) ID - Medvedovic2000 ER - TY - JOUR AU - Freudenberg, J. M. AU - Sivaganesan, S. AU - Wagner, M. AU - Medvedovic, M. PY - 2011 DA - 2011// TI - A semi-parametric Bayesian model for unsupervised differential co-expression analysis JO - BMC Bioinformatics VL - 27 UR - https://doi.org/10.1093/bioinformatics/btq593 DO - 10.1093/bioinformatics/btq593 ID - Freudenberg2011 ER - TY - JOUR AU - Medvedovic, M. AU - Sivaganesan, S. PY - 2002 DA - 2002// TI - Bayesian infinite mixture model based clustering of gene expression profiles JO - Bioinformatics VL - 18 UR - https://doi.org/10.1093/bioinformatics/18.9.1194 DO - 10.1093/bioinformatics/18.9.1194 ID - Medvedovic2002 ER - TY - JOUR AU - Medvedovic, M. AU - Yeung, K. Y. AU - Bumgarner, R. E. PY - 2004 DA - 2004// TI - Bayesian mixture model based clustering of replicated microarray data JO - Bioinformatics VL - 20 UR - https://doi.org/10.1093/bioinformatics/bth068 DO - 10.1093/bioinformatics/bth068 ID - Medvedovic2004 ER - TY - JOUR AU - Freudenberg, J. M. AU - Joshi, V. K. AU - Hu, Z. AU - Medvedovic, M. PY - 2009 DA - 2009// TI - CLEAN: CLustering Enrichment ANalysis JO - BMC Bioinformatics VL - 10 UR - https://doi.org/10.1186/1471-2105-10-234 DO - 10.1186/1471-2105-10-234 ID - Freudenberg2009 ER - TY - JOUR AU - Newman, J. C. AU - Weiner, A. M. PY - 2005 DA - 2005// TI - L2L: a simple tool for discovering the hidden significance in microarray expression data JO - Genome Biol VL - 6 UR - https://doi.org/10.1186/gb-2005-6-9-r81 DO - 10.1186/gb-2005-6-9-r81 ID - Newman2005 ER - TY - CHAP AU - Chang, D. AU - Kantardzic, M. AU - Ouyang, M. PY - 2009 DA - 2009// TI - Hierarchical clustering with CUDA/GPU BT - Proceedings of the ISCA 22nd International Conference on Parallel and Distributed Computing and Communication Systems (PDCCS 2009) ID - Chang2009 ER -