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Table 2 Summary of the results for five different bacterial species

From: SNIT: SNP identification for strain typing

Species No. of
Genomes 		Combined Size
(Mbp) 		Time
(min) 		Accuracy
(%)
Bacillus anthracis 7 36 4 100
Francisella tularensis 11 22 3 100
Shigella flexneri 4 18 2 100
Burkholderia mallei 10 59 19 100
Burkholderia pseudomallei 20 144 45 75
  1. Accuracy is defined as the percentage of genomes for which the correct closest neighbors were identified based on published phylogenies for the species. The runs were performed using a single processor on a 3.6 GHz dual processor system with 4 GB RAM.
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Source Code for Biology and Medicine

ISSN: 1751-0473