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Figure 1 | Source Code for Biology and Medicine

Figure 1

From: SNIT: SNP identification for strain typing

Figure 1

Outline of the SNP identification pipeline. The tandem repeat regions in the input genomes can be masked using the Tandem Repeat Finder (TRF) program. Each input genome is aligned against a user-specified reference genome. The lists of differentiating SNPs and indels between each pair of input genomes are constructed from these pairwise alignments.

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