CONTIGuator: a bacterial genomes finishing tool for structural insights on draft genomes

Table 1 Comparison between ABACAS and CONTIGuator performances over the four test genomes.

		*B. microti*	*Y. enterocolitica*	*L. lactis*	*S. meliloti*
bp Mapped	CONTIGuator	3291978	4164667	1912883	6350458
	ABACAS	3256036	3876600	1803685	5754197
	PGA4genomics	3267649	3090612	1761837	6897232
	OSlay	3286027	4236992	2020582	6906017
	Projector2	3271308	3160370	1661752	262344
PCR pairs	CONTIGuator	61	304	89	73
	ABACAS	49	255	78	62
	Projector2	71	278	367	20
Gaps putatively closed	CONTIGuator	58	171	63	39
	ABACAS	42	158	56	35
	Projector2	64	90	323	4

The base pairs derived from those contigs appearing in more than one replicon were divided by two.

ISSN: 1751-0473