Figure 3
From: Faunus: An object oriented framework for molecular simulation
Graphical analysis. Lysozyme interacting with a fab-fragment – a simulation containing more than 340 amino acid residues as well as salt particles. The probability of finding lysozyme's mass-center around the the fab fragment is illustrated by the pink iso-surface. VMD [17] and Povray [20] was used to visualize the generated output from Faunus.