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Table 2 Mutually best matches between rat and mouse bromodomains

From: Pspace: a program that assesses protein space

Rat bromodomain Mouse bromodomain OK? %score % id
ENSRNOP00000016581/43–153 ENSMUSP00000061312/43–153 O 99 99
ENSRNOP00000016581/175–289 ENSMUSP00000061312/175–289 O 100 100
ENSRNOP00000016581/379–489 ENSMUSP00000061312/379–489 O 99 99
ENSRNOP00000016581/516–627 ENSMUSP00000061312/516–627 O 100 100
ENSRNOP00000016581/651–765 ENSMUSP00000061312/651–765 O 100 100
ENSRNOP00000016581/775–881 ENSMUSP00000061312/775–881 O 98 97
Q6MGA9_RAT/71–181 Q7JJ13_MOUSE/71–181 O 100 100
Q6MGA9_RAT/345–454 Q7JJ13_MOUSE/345–454 O 100 100
Q75QC6_RAT/111–217 Q3UKS1_MOUSE/111–217 O 100 100
UPI00001813C2/129–237 BRD7_MOUSE/129–237 O 100 100
UPI0000182A85/235–342 ENSMUSP00000073649/279–386 U 91 85
UPI00001D014C/663–771 Q8CFP4_MOUSE/21–129   63 31
UPI00001D0817/1330–1438 UPI0000020C93/1333–1441   98 95
UPI0000250558/625–733 ENSMUSP00000071391/624–732   100 100
UPI0000250E9C/722–830 Q3TZ59_MOUSE/719–827 O 100 100
UPI000025122E/696–800 TIF1B_MOUSE/697–801 O 100 100
UPI0000500889/1036–1142 SMUSP00000033339/1171–1277 U 100 100
UPI0000500ABF/1387–1515 UPI000042B0CA/1391–1501   97 99
UPI0000500BE2/1085–1195 SMUSP00000087991/1085–1195 O 100 100
UPI0000500F2E/1000–1108 Q6P9L3_MOUSE/993–1101 U 99 98
UPI000050107F/1159–1272 UPI0000565734/1156–1267 O 98 98
UPI000050107F/1321–1426 UPI0000565734/1317–1422 O 99 99
UPI00005018FB/24–134 ENSMUSP00000031215/24–134   97 91
UPI00005018FB/268–377 ENSMUSP00000031215/268–377   97 93
UPI0000502201/158–266 UPI00001C60A3/153–261 O 99 98
UPI0000502202/784–892 BRD8_MOUSE/778–886 O 100 100
UPI000050282E/976–1099 UPI00004351D5/972–1095   97 95
UPI00005029F4/667–775 ENSMUSP00000004985/88–196 U 98 97
UPI0000502B77/30–140 Q5CCJ9_MOUSE/31–141 U 100 100
UPI0000502B77/306–415 Q5CCJ9_MOUSE/307–416 U 100 100
UPI0000502F4F/171–278 UPI0000566B4C/171–278 O 100 100
UPI0000503116/900–1005 TIF1A_MOUSE/902–1007   100 100
UPI0000503365/1–73 UPI0000564B4C/1047–1157 U 64 31
UPI0000503A1F/764–872 ENSMUSP00000039757/742–850 O 99 99
UPI0000503C43/1742–1850 UPI0000026135/1734–1842 U 99 99
UPI0000503CEB/56–166 ENSMUSP00000003726/56–166 O 100 100
UPI0000503CEB/351–460 ENSMUSP00000003726/351–460 O 100 100
UPI0000503EC8/965–1077 UPI00001C594E/955–1067   100 100
UPI00005040EC/1422–1533 Q6AXG8_MOUSE/1422–1533 O 100 100
UPI000050419C/1544–1678 UPI0000565818/1535–1669 U 99 98
UPI00005042C5/646–749 SMUSP00000034787/1158–1261 O 100 100
UPI00005042C5/806–911 SMUSP00000034787/1318–1423 O 99 99
UPI00005045CC/670–773 UPI000056580C/258–361 O 97 92
UPI00005049DA/1399–1507 Q80UV9_MOUSE/799–907 O 100 100
UPI00005049DA/1521–1630 Q80UV9_MOUSE/921–1030 O 99 99
  1. O or U in the column headed with OK? marks matches that are actual orthologs and where the function of the rat sequence is unknown, respectively. The columns headed by %score and %id give the measure of similarity between the matched sequences as the percentage of the maximum possible score and of the identical residues, respectively.