Skip to main content

Table 2 Mutually best matches between rat and mouse bromodomains

From: Pspace: a program that assesses protein space

Rat bromodomain

Mouse bromodomain

OK?

%score

% id

ENSRNOP00000016581/43–153

ENSMUSP00000061312/43–153

O

99

99

ENSRNOP00000016581/175–289

ENSMUSP00000061312/175–289

O

100

100

ENSRNOP00000016581/379–489

ENSMUSP00000061312/379–489

O

99

99

ENSRNOP00000016581/516–627

ENSMUSP00000061312/516–627

O

100

100

ENSRNOP00000016581/651–765

ENSMUSP00000061312/651–765

O

100

100

ENSRNOP00000016581/775–881

ENSMUSP00000061312/775–881

O

98

97

Q6MGA9_RAT/71–181

Q7JJ13_MOUSE/71–181

O

100

100

Q6MGA9_RAT/345–454

Q7JJ13_MOUSE/345–454

O

100

100

Q75QC6_RAT/111–217

Q3UKS1_MOUSE/111–217

O

100

100

UPI00001813C2/129–237

BRD7_MOUSE/129–237

O

100

100

UPI0000182A85/235–342

ENSMUSP00000073649/279–386

U

91

85

UPI00001D014C/663–771

Q8CFP4_MOUSE/21–129

 

63

31

UPI00001D0817/1330–1438

UPI0000020C93/1333–1441

 

98

95

UPI0000250558/625–733

ENSMUSP00000071391/624–732

 

100

100

UPI0000250E9C/722–830

Q3TZ59_MOUSE/719–827

O

100

100

UPI000025122E/696–800

TIF1B_MOUSE/697–801

O

100

100

UPI0000500889/1036–1142

SMUSP00000033339/1171–1277

U

100

100

UPI0000500ABF/1387–1515

UPI000042B0CA/1391–1501

 

97

99

UPI0000500BE2/1085–1195

SMUSP00000087991/1085–1195

O

100

100

UPI0000500F2E/1000–1108

Q6P9L3_MOUSE/993–1101

U

99

98

UPI000050107F/1159–1272

UPI0000565734/1156–1267

O

98

98

UPI000050107F/1321–1426

UPI0000565734/1317–1422

O

99

99

UPI00005018FB/24–134

ENSMUSP00000031215/24–134

 

97

91

UPI00005018FB/268–377

ENSMUSP00000031215/268–377

 

97

93

UPI0000502201/158–266

UPI00001C60A3/153–261

O

99

98

UPI0000502202/784–892

BRD8_MOUSE/778–886

O

100

100

UPI000050282E/976–1099

UPI00004351D5/972–1095

 

97

95

UPI00005029F4/667–775

ENSMUSP00000004985/88–196

U

98

97

UPI0000502B77/30–140

Q5CCJ9_MOUSE/31–141

U

100

100

UPI0000502B77/306–415

Q5CCJ9_MOUSE/307–416

U

100

100

UPI0000502F4F/171–278

UPI0000566B4C/171–278

O

100

100

UPI0000503116/900–1005

TIF1A_MOUSE/902–1007

 

100

100

UPI0000503365/1–73

UPI0000564B4C/1047–1157

U

64

31

UPI0000503A1F/764–872

ENSMUSP00000039757/742–850

O

99

99

UPI0000503C43/1742–1850

UPI0000026135/1734–1842

U

99

99

UPI0000503CEB/56–166

ENSMUSP00000003726/56–166

O

100

100

UPI0000503CEB/351–460

ENSMUSP00000003726/351–460

O

100

100

UPI0000503EC8/965–1077

UPI00001C594E/955–1067

 

100

100

UPI00005040EC/1422–1533

Q6AXG8_MOUSE/1422–1533

O

100

100

UPI000050419C/1544–1678

UPI0000565818/1535–1669

U

99

98

UPI00005042C5/646–749

SMUSP00000034787/1158–1261

O

100

100

UPI00005042C5/806–911

SMUSP00000034787/1318–1423

O

99

99

UPI00005045CC/670–773

UPI000056580C/258–361

O

97

92

UPI00005049DA/1399–1507

Q80UV9_MOUSE/799–907

O

100

100

UPI00005049DA/1521–1630

Q80UV9_MOUSE/921–1030

O

99

99

  1. O or U in the column headed with OK? marks matches that are actual orthologs and where the function of the rat sequence is unknown, respectively. The columns headed by %score and %id give the measure of similarity between the matched sequences as the percentage of the maximum possible score and of the identical residues, respectively.