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Table 2 Regulators that affect the expression levels of ABC transporter genes

From: BISON: bio-interface for the semi-global analysis of network patterns

Regulator gene1

HMM of the regulator2

Regulated genes3

HMM of regulated proteins4

Two-component systems

   

torS

response_reg

fepC

abc_tran

phoB

response_reg

ugpC, pstB, phnL, phnK, phnC

abc_tran

narL

response_reg

cydC, cydD, ccmA

abc_tran

narP

response_reg

ccmA

abc_tran

rcsB

response_reg

tauB, fepC, ycjV, nikD, nikE, malK

abc_tran

torR

hiska

fepC

abc_tran

rcsC

hiska, response_reg

tauB, fepC, ycjV, nikD, nikE, malK

abc_tran

ompR

response_reg

yehX, cysA, proV, ugpC, dppD

abc_tran

envZ

hiska

yehX, cysA, proV, ugpC, dppD

abc_tran

glnG

hth_8

glnQ, potG, dppF, dppD, hisP, yhdZ

abc_tran

DNA binding proteins

   

modE

hth_1

modC, ccmA

abc_tran

cysB

hth_1

tauB, cysA

abc_tran

cbl

hth_1

tauB

abc_tran

oxyR

hth_1

sufC

abc_tran

  1. 1Genes encoding regulators that affect the expression levels of ABC transporter genes are taken from the 'Gene 0' column on the navigation page.
  2. 2HMMs for the regulators are taken from the 'Descriptors' column on the navigation page. HMMs are indicative of the functional categories of regulators (bold subheadings) that affect the expression levels of ABC transporters.
  3. 3Genes encoding ABC transporters that are affected by the regulators in column 2 are taken from the 'Gene 1' column on the navigation page.
  4. 4HMMs for the regulated proteins are taken from the 'Descriptors' column on the navigation page. HMMs are indicative of ABC transporters.