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Table 2 Regulators that affect the expression levels of ABC transporter genes

From: BISON: bio-interface for the semi-global analysis of network patterns

Regulator gene1 HMM of the regulator2 Regulated genes3 HMM of regulated proteins4
Two-component systems    
torS response_reg fepC abc_tran
phoB response_reg ugpC, pstB, phnL, phnK, phnC abc_tran
narL response_reg cydC, cydD, ccmA abc_tran
narP response_reg ccmA abc_tran
rcsB response_reg tauB, fepC, ycjV, nikD, nikE, malK abc_tran
torR hiska fepC abc_tran
rcsC hiska, response_reg tauB, fepC, ycjV, nikD, nikE, malK abc_tran
ompR response_reg yehX, cysA, proV, ugpC, dppD abc_tran
envZ hiska yehX, cysA, proV, ugpC, dppD abc_tran
glnG hth_8 glnQ, potG, dppF, dppD, hisP, yhdZ abc_tran
DNA binding proteins    
modE hth_1 modC, ccmA abc_tran
cysB hth_1 tauB, cysA abc_tran
cbl hth_1 tauB abc_tran
oxyR hth_1 sufC abc_tran
  1. 1Genes encoding regulators that affect the expression levels of ABC transporter genes are taken from the 'Gene 0' column on the navigation page.
  2. 2HMMs for the regulators are taken from the 'Descriptors' column on the navigation page. HMMs are indicative of the functional categories of regulators (bold subheadings) that affect the expression levels of ABC transporters.
  3. 3Genes encoding ABC transporters that are affected by the regulators in column 2 are taken from the 'Gene 1' column on the navigation page.
  4. 4HMMs for the regulated proteins are taken from the 'Descriptors' column on the navigation page. HMMs are indicative of ABC transporters.