From: BISON: bio-interface for the semi-global analysis of network patterns
Regulator gene1 | HMM of the regulator2 | Regulated genes3 | HMM of regulated proteins4 |
---|---|---|---|
Two-component systems | |||
torS | response_reg | fepC | abc_tran |
phoB | response_reg | ugpC, pstB, phnL, phnK, phnC | abc_tran |
narL | response_reg | cydC, cydD, ccmA | abc_tran |
narP | response_reg | ccmA | abc_tran |
rcsB | response_reg | tauB, fepC, ycjV, nikD, nikE, malK | abc_tran |
torR | hiska | fepC | abc_tran |
rcsC | hiska, response_reg | tauB, fepC, ycjV, nikD, nikE, malK | abc_tran |
ompR | response_reg | yehX, cysA, proV, ugpC, dppD | abc_tran |
envZ | hiska | yehX, cysA, proV, ugpC, dppD | abc_tran |
glnG | hth_8 | glnQ, potG, dppF, dppD, hisP, yhdZ | abc_tran |
DNA binding proteins | |||
modE | hth_1 | modC, ccmA | abc_tran |
cysB | hth_1 | tauB, cysA | abc_tran |
cbl | hth_1 | tauB | abc_tran |
oxyR | hth_1 | sufC | abc_tran |