Table 1 Programs and their corresponding problem settings for epistasis detection in GWAS
From: Tools for efficient epistasis detection in genome-wide association study
Program | Trait | Genotype | Error Type | Sample Size | Supported Test |
|---|---|---|---|---|---|
FastANOVA | quantitative | binary | FWER | less than a hundred | ANOVA test |
COE | binary | binary | FWER | less than a hundred | convex test |
TEAM | binary | any | FWER & FDR | hundreds to thousands | test based on contingency tables |