Table 3 Summary of the features of HAMSTER.
From: HAMSTER: visualizing microarray experiments as a set of minimum spanning trees
Program | Feature | Options |
|---|---|---|
build-mst | Dissimilarities | Euclidean, Manhattan, Pearson correlation, and Spearman correlation |
build-mst | Linkages | Single, Average, Complete, and Centroid |
build-mst | Centroid linkage types | Euclidean, Manhattan, Pearson correlation, and Spearman correlation |
layout-mst | Colors and shapes | Same as Graphviz |
layout-mst | File formats | PNG, SVG, and Postscript; additional formats supported by Graphviz available by modifying the source code |